With shortcode no, but you could via js filter in your theme functions.php file.

Example:

add_action('stec_after_html', function() {
    ?>
    <script type="text/javascript">
        (function ($) {
            $.stecExtend(function (m) {
                m.$instance.on(m.helper.clickHandle(), '.stec-layout-event-preview', function () {
                    var $event = $(this).parents('.stec-layout-event').first();
                    var eventId = parseInt($event.data('id'), 10);
                    // Events with ids 1 2 and 3 will open in external link
                    var openInExternal = [1, 2, 3];
                    // Events with ids 4,5,6 will open in single page
                    var openInSinglePage = [4, 5, 6];
                    if (-1 !== $.inArray(eventId, openInExternal)) {
                        m.glob.options.general_settings.open_event_in = 'external';
                        return;
                    }
                    if (-1 !== $.inArray(eventId, openInSinglePage)) {
                        m.glob.options.general_settings.open_event_in = 'single';
                        return;
                    }
                });
            });
        })(jQuery);
    </script>
    <?php
});

Change the values for 

var openInExternal = [1, 2, 3];

and 

var openInSinglePage = [4, 5, 6];

to the corresponding events' ids

In your calendar settings set Open Events In to "popup".